Advanced Tutorials

These tutorials cover more specialized BioNetGen topics, beyond the basics covered in BioNetGen Quickstart and the PyBioNetGen Tutorials.

Contents:

• Modeling Transport using Compartmental BNGL (cBNGL) and Local Functions
• Modeling Immune Receptor Signaling: FcεRI Aggregation
• Modeling Growth Factor Signaling: EGFR Adapter Recruitment
• Modeling JAK-STAT Signaling with Negative Feedback
• A Simple Model of Polymerization: LAT-Grb2-SOS
• A Simple Model of Translation, Inspired by TASEP
• Energy-Based Modeling: Cooperativity in Complex Formation
• Atomizer