Quickstart
Installation
See Installation to learn how to get PyBioNetGen.
Basic Usage
PyBioNetGen’s CLI can be used to simply run a BNGL model
bionetgen run -i mymodel.bngl -o output_folder
which will create output_folder
and run mymodel.bngl
inside that folder.
For other subcommands or more information on how to use PyBioNetGen’s CLI, please see Command Line Interface.
PyBioNetGen’s library can also be used to run a BNGL model
import bionetgen
result = bionetgen.run("mymodel.bngl", output="myfolder")
which will create numpy record arrays. For other methods or more information on how to use PyBioNetGen’s library, please see Library.